Transcript: lnc-CSNK1G1-1:2

Basic information

LNCipedia transcript ID: lnc-CSNK1G1-1:2 
LNCipedia gene ID: lnc-CSNK1G1-1
Location (hg19): chr15:64592514-64665980
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 595 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000560278.1; CTD-2116N17.1-002; OTTHUMT00000418694.1; NONHSAT046657
Alternative gene names: ENSG00000259316.1; CTD-2116N17.1; OTTHUMG00000172470.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.2163 non-coding 
CPAT coding probability 2.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSNK1G1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0101-1:1
4.0 lnc-CSNK1G1-1:2
4.1 lnc-CSNK1G1-1:2
5.0 lnc-CSNK1G1-1:2
5.1 lnc-TIPIN-59:2
5.2 lnc-CSNK1G1-1:2