Transcript: lnc-CSNK1G3-11:1

Basic information

LNCipedia transcript ID: lnc-CSNK1G3-11:1 
LNCipedia gene ID: lnc-CSNK1G3-11
Location (hg19): chr5:123731296-123736088
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 675 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00009499; ENST00000510004; ENST00000510004.1; CTC-369A16.2-001; OTTHUMT00000372350.1; NONHSAT103520
Alternative gene names: XLOC_004533; linc-GRAMD3-7; ENSG00000251421; CTC-369A16.2; ENSG00000251421.1; OTTHUMG00000163244.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.7677 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSNK1G3-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-43D2.2.1-6:1
3.1 lnc-RP11-43D2.2.1-11:1
4.0 lnc-RP11-43D2.2.1-11:1
4.1 lnc-RP11-43D2.2.1-11:1
5.0 lnc-RP11-43D2.2.1-11:1
5.1 lnc-PDLIM4-136:1
5.2 lnc-CSNK1G3-11:1