Transcript: lnc-CSNK1G3-11:3

Basic information

LNCipedia transcript ID: lnc-CSNK1G3-11:3 
LNCipedia gene ID: lnc-CSNK1G3-11
Location (hg19): chr5:123731640-123736348
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 591 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000510853; ENST00000510853.2; CTC-369A16.3-001; OTTHUMT00000372354.2
Alternative gene names: ENSG00000251662; CTC-369A16.3; ENSG00000251662.2; OTTHUMG00000163248.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.7677 non-coding 
CPAT coding probability 7.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSNK1G3-11:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-43D2.2.1-6:2
3.1 lnc-RP11-43D2.2.1-11:2
4.0 lnc-RP11-43D2.2.1-11:2
4.1 lnc-RP11-43D2.2.1-11:2
5.0 lnc-RP11-43D2.2.1-11:2
5.1 lnc-PDLIM4-136:3
5.2 lnc-CSNK1G3-11:3