Transcript: lnc-CSNK1G3-5:1

Basic information

LNCipedia transcript ID: lnc-CSNK1G3-5:1 
LNCipedia gene ID: lnc-CSNK1G3-5
Location (hg19): chr5:124068940-124069465
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 526 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000515136.1; RP11-436H11.4-001; OTTHUMT00000372357.1; NONHSAT103533
Alternative gene names: ENSG00000251274.1; RP11-436H11.4; OTTHUMG00000163251.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.5736 non-coding 
CPAT coding probability 3.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSNK1G3-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-43D2.2.1-4:1
4.0 lnc-RP11-43D2.2.1-4:1
4.1 lnc-RP11-43D2.2.1-4:1
5.0 lnc-RP11-43D2.2.1-4:1
5.1 lnc-PDLIM4-129:1
5.2 lnc-CSNK1G3-5:1