Transcript: lnc-CSNK1G3-8:1

Basic information

LNCipedia transcript ID: lnc-CSNK1G3-8:1 
LNCipedia gene ID: lnc-CSNK1G3-8
Ensembl Gene ID: ENSG00000250438
Ensembl Transcript ID: ENST00000510570
Location (hg19): chr5:123805284-123805594
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 311 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510570; ENST00000510570.1; CTD-2308B18.2-001; OTTHUMT00000371294.1; NONHSAT103524
Alternative gene names: ENSG00000250438; CTD-2308B18.2; ENSG00000250438.1; OTTHUMG00000162993.1; AC025465.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.3139 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSNK1G3-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-43D2.2.1-3:1
3.1 lnc-RP11-43D2.2.1-8:1
4.0 lnc-RP11-43D2.2.1-8:1
4.1 lnc-RP11-43D2.2.1-8:1
5.0 lnc-RP11-43D2.2.1-8:1
5.1 lnc-PDLIM4-134:1
5.2 lnc-CSNK1G3-8:1