Transcript: lnc-CSNK1G3-9:1

Basic information

LNCipedia transcript ID: lnc-CSNK1G3-9:1 
LNCipedia gene ID: lnc-CSNK1G3-9
Ensembl Gene ID: ENSG00000248600
Ensembl Transcript ID: ENST00000502809
Location (hg19): chr5:123791066-123795791
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 608 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009500; ENST00000502809; ENST00000502809.1; CTD-2308B18.4-001; OTTHUMT00000372363.1; NONHSAT103522
Alternative gene names: XLOC_004534; linc-GRAMD3-6; ENSG00000248600; CTD-2308B18.4; ENSG00000248600.1; OTTHUMG00000163257.1; AC025465.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -204.0183 non-coding 
CPAT coding probability 2.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSNK1G3-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-43D2.2.1-4:1
3.1 lnc-RP11-43D2.2.1-9:1
4.0 lnc-RP11-43D2.2.1-9:1
4.1 lnc-RP11-43D2.2.1-9:1
5.0 lnc-RP11-43D2.2.1-9:1
5.1 lnc-PDLIM4-135:1
5.2 lnc-CSNK1G3-9:1