Transcript: lnc-CSNK2A1-1:1

Basic information

LNCipedia transcript ID: lnc-CSNK2A1-1:1 
LNCipedia gene ID: lnc-CSNK2A1-1
Location (hg19): chr20:453141-459285
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1494 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028276; NONHSAT078075
Alternative gene names: XLOC_013621; linc-TBC1D20


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.0456 non-coding 
CPAT coding probability 6.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSNK2A1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSNK2A1-1:1
3.1 lnc-CSNK2A1-1:1
4.0 lnc-CSNK2A1-1:1
4.1 lnc-CSNK2A1-1:1
5.0 lnc-CSNK2A1-1:1
5.1 lnc-RNF24-73:1
5.2 lnc-CSNK2A1-1:1