Transcript: lnc-CSPG4-1:13

Basic information

LNCipedia transcript ID: lnc-CSPG4-1:13 
LNCipedia gene ID: lnc-CSPG4-1
Location (hg19): chr15:76019953-76030958
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6391 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000246877.1|MICT00000119904.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.3162 non-coding 
CPAT coding probability 33.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSPG4-1:13 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CSPG4-1:13
5.0 lnc-CSPG4-1:13
5.1 lnc-PEAK1-28:11
5.2 lnc-CSPG4-1:13