Transcript: lnc-CSPG5-2:1

Basic information

LNCipedia transcript ID: lnc-CSPG5-2:1 
LNCipedia gene ID: lnc-CSPG5-2
Ensembl Gene ID: ENSG00000214773
Ensembl Transcript ID: ENST00000398957
Location (hg19): chr3:47643205-47646167
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1428 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000398957.1; RP11-717D12.1-001; OTTHUMT00000446543.1; NONHSAT089522
Alternative gene names: ENSG00000214773.1; RP11-717D12.1; OTTHUMG00000179466.1; AC112512.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.4709 non-coding 
CPAT coding probability 12.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSPG5-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC112512.1-1:1
4.0 lnc-AC112512.1-1:1
4.1 lnc-AC112512.1-1:1
5.0 lnc-AC112512.1-1:1
5.1 lnc-TMEM89-28:1
5.2 lnc-CSPG5-2:1