Transcript: lnc-CST8-3:1

Basic information

LNCipedia transcript ID: lnc-CST8-3:1 
LNCipedia gene ID: lnc-CST8-3
Ensembl Gene ID: ENSG00000230908
Ensembl Transcript ID: ENST00000437012
Location (hg19): chr20:23778778-23786300
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 797 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027915; ENST00000437012.1; XXyac-YX60D10.1-001; OTTHUMT00000256830.1; NONHSAT079086
Alternative gene names: XLOC_013494; linc-TMEM90B-4; ENSG00000230908.1; XXyac-YX60D10.1; OTTHUMG00000133141.1; AL591074.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.3556 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CST8-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CST8-3:1
3.1 lnc-CST8-3:1
4.0 lnc-CST8-3:1
4.1 lnc-CST8-3:1
5.0 lnc-CST8-3:1
5.1 lnc-CST8-3:1
5.2 lnc-CST8-3:1