Transcript: lnc-CT83-1:2

Basic information

LNCipedia transcript ID: lnc-CT83-1:2 
LNCipedia gene ID: lnc-CT83-1
Ensembl Gene ID: ENSG00000230159
Ensembl Transcript ID: ENST00000446495
Location (hg19): chrX:115826878-115828156
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 512 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446495; ENST00000446495.1; RP11-232D9.3-001; OTTHUMT00000057990.1
Alternative gene names: ENSG00000230159; RP11-232D9.3; ENSG00000230159.1; OTTHUMG00000022248.1; BX119904.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.7421 non-coding 
CPAT coding probability 3.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CT83-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXorf61-1:1
3.1 lnc-CXorf61-1:1
4.0 lnc-CXorf61-1:1
4.1 lnc-CXorf61-1:1
5.0 lnc-CXorf61-1:1
5.1 lnc-CT47A8-57:2
5.2 lnc-CT83-1:2