Transcript: lnc-CTAGE1-1:27

Basic information

LNCipedia transcript ID: lnc-CTAGE1-1:27 
LNCipedia gene ID: lnc-CTAGE1-1
Location (hg19): chr18:19928868-19929243
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 285 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026454; NONHSAT058617
Alternative gene names: XLOC_012788; linc-ABHD3-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 21.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTAGE1-1:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-863N1.2.1-1:1
3.1 lnc-RP11-863N1.2.1-1:1
4.0 lnc-RP11-863N1.2.1-1:1
4.1 lnc-RP11-863N1.2.1-1:1
5.0 lnc-RP11-863N1.2.1-1:1
5.1 lnc-SMAD2-199:1
5.2 lnc-CTAGE1-1:27