Transcript: lnc-CTAGE1-3:2

Basic information

LNCipedia transcript ID: lnc-CTAGE1-3:2 
LNCipedia gene ID: lnc-CTAGE1-3
Ensembl Gene ID: ENSG00000264012
Ensembl Transcript ID: ENST00000578504
Location (hg19): chr18:19755426-19756623
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 359 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000578504.1; RP11-627G18.2-001; OTTHUMT00000446378.1; NONHSAT058612
Alternative gene names: ENSG00000264012.1; RP11-627G18.2; OTTHUMG00000179441.1; AC091588.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -267.7329 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTAGE1-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-863N1.2.1-3:1
4.0 lnc-RP11-863N1.2.1-3:1
4.1 lnc-RP11-863N1.2.1-3:1
5.0 lnc-RP11-863N1.2.1-3:1
5.1 lnc-SMAD2-202:1
5.2 lnc-CTAGE1-3:2