Transcript: lnc-CTAGE1-7:1

Basic information

LNCipedia transcript ID: lnc-CTAGE1-7:1 
LNCipedia gene ID: lnc-CTAGE1-7
Ensembl Gene ID: ENSG00000266283
Ensembl Transcript ID: ENST00000583442
Location (hg19): chr18:19780582-19785192
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 770 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583442.1; RP11-627G18.1-001; OTTHUMT00000446379.1; NONHSAT058614
Alternative gene names: ENSG00000266283.1; RP11-627G18.1; OTTHUMG00000179442.1; AC091588.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -203.2322 non-coding 
CPAT coding probability 3.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTAGE1-7:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-863N1.2.1-2:1
4.0 lnc-RP11-863N1.2.1-2:1
4.1 lnc-RP11-863N1.2.1-2:1
5.0 lnc-RP11-863N1.2.1-2:1
5.1 lnc-SMAD2-201:1
5.2 lnc-CTAGE1-7:1