Transcript: lnc-CTAGE5-8:27

Basic information

LNCipedia transcript ID: lnc-CTAGE5-8:27 
LNCipedia gene ID: lnc-CTAGE5-8
Ensembl Gene ID: ENSG00000258526
Ensembl Transcript ID: ENST00000557197
Location (hg19): chr14:39944139-39962716
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 495 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557197; ENST00000557197.1; RP11-111A21.1-003; OTTHUMT00000409980.1; NONHSAT036546
Alternative gene names: ENSG00000258526; RP11-111A21.1; ENSG00000258526.1; OTTHUMG00000170672.1; ENSG00000258526.5; AL049875.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.8758 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTAGE5-8:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTAGE5-1:12
3.1 lnc-CTAGE5-1:12
4.0 lnc-CTAGE5-1:12
4.1 lnc-CTAGE5-1:12
5.0 lnc-CTAGE5-1:12
5.1 lnc-BRMS1L-78:27
5.2 lnc-CTAGE5-8:27