Transcript: lnc-CTAGE5-8:29

Basic information

LNCipedia transcript ID: lnc-CTAGE5-8:29 
LNCipedia gene ID: lnc-CTAGE5-8
Location (hg19): chr14:39954220-39982983
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 405 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000555555; ENST00000555555.1; RP11-111A21.1-001; OTTHUMT00000409981.1; NONHSAT036549
Alternative gene names: ENSG00000258526; RP11-111A21.1; ENSG00000258526.1; OTTHUMG00000170672.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.3415 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTAGE5-8:29 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTAGE5-1:13
3.1 lnc-CTAGE5-1:13
4.0 lnc-CTAGE5-1:13
4.1 lnc-CTAGE5-1:13
5.0 lnc-CTAGE5-1:13
5.1 lnc-BRMS1L-78:29
5.2 lnc-CTAGE5-8:29