Transcript: lnc-CTBP2-2:1

Basic information

LNCipedia transcript ID: lnc-CTBP2-2:1 
LNCipedia gene ID: lnc-CTBP2-2
Location (hg19): chr10:126617452-126619962
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 430 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00018063; ENST00000446713.1; RP11-298J20.1-001; OTTHUMT00000050895.1; NONHSAT016867
Alternative gene names: XLOC_008981; linc-METTL10; ENSG00000237866.1; RP11-298J20.1; OTTHUMG00000019220.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.1884 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTBP2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTBP2-1:1
3.1 lnc-CTBP2-2:1
4.0 lnc-CTBP2-2:1
4.1 lnc-CTBP2-2:1
5.0 lnc-CTBP2-2:1
5.1 lnc-UROS-12:1
5.2 lnc-CTBP2-2:1