Transcript: lnc-CTCFL-1:1

Basic information

LNCipedia transcript ID: lnc-CTCFL-1:1 
LNCipedia gene ID: lnc-CTCFL-1
Location (hg19): chr20:56130115-56134053
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2067 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000503777; TCONS_00028072; NONHSAT080509
Alternative gene names: ENSG00000251422; XLOC_013814; linc-CTCFL-1; AL035541.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.9738 non-coding 
CPAT coding probability 1.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTCFL-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTCFL-1:1
3.1 lnc-CTCFL-1:1
4.0 lnc-CTCFL-1:1
4.1 lnc-CTCFL-1:1
5.0 lnc-CTCFL-1:1
5.1 lnc-SPATA2-92:1
5.2 lnc-CTCFL-1:1