Transcript: lnc-CTDSP2-4:2

Basic information

LNCipedia transcript ID: lnc-CTDSP2-4:2 
LNCipedia gene ID: lnc-CTDSP2-4
Location (hg19): chr12:58488697-58491796
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3100 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000579834.1; RP11-489P6.1-002; OTTHUMT00000421185.1; NONHSAT029019
Alternative gene names: ENSG00000264432.1; RP11-489P6.1; OTTHUMG00000172889.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.7605 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTDSP2-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTDSP2-4:2
4.0 lnc-CTDSP2-4:2
4.1 lnc-CTDSP2-4:2
5.0 lnc-CTDSP2-4:2
5.1 lnc-PMEL-78:3
5.2 lnc-CTDSP2-4:2