Transcript: lnc-CTR9-1:2

Basic information

LNCipedia transcript ID: lnc-CTR9-1:2 
LNCipedia gene ID: lnc-CTR9-1
Location (hg19): chr11:10804860-10823172
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 441 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000532365.1; RP11-685M7.5-001; OTTHUMT00000386890.1; NONHSAT017980
Alternative gene names: ENSG00000255125.1; RP11-685M7.5; OTTHUMG00000165887.1; AC116535.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -259.1528 non-coding 
CPAT coding probability 1.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTR9-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTR9-1:2
4.0 lnc-CTR9-1:2
4.1 lnc-CTR9-1:2
5.0 lnc-CTR9-1:2
5.1 lnc-AMPD3-5:2
5.2 lnc-CTR9-1:2