Transcript: lnc-CTSD-1:1

Basic information

LNCipedia transcript ID: lnc-CTSD-1:1 
LNCipedia gene ID: lnc-CTSD-1
Location (hg19): chr11:1792623-1793111
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 404 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019559; NONHSAT017424
Alternative gene names: XLOC_009354; linc-CTSD-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.9133 non-coding 
CPAT coding probability 5.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTSD-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTSD-1:1
3.1 lnc-CTSD-1:1
4.0 lnc-CTSD-1:1
4.1 lnc-CTSD-1:1
5.0 lnc-CTSD-1:1
5.1 lnc-OR52A1-58:1
5.2 lnc-CTSD-1:1