Transcript: lnc-CTSF-1:1

Basic information

LNCipedia transcript ID: lnc-CTSF-1:1 
LNCipedia gene ID: lnc-CTSF-1
Ensembl Gene ID: ENSG00000250105
Ensembl Transcript ID: ENST00000504911
Location (hg19): chr11:66326337-66327855
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 580 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504911; ENST00000504911.1; CTD-3074O7.2-001; OTTHUMT00000362463.1; NONHSAT022317
Alternative gene names: ENSG00000250105; CTD-3074O7.2; ENSG00000250105.1; OTTHUMG00000160821.1; AP002748.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -225.171 non-coding 
CPAT coding probability 9.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTSF-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTSF-1:1
3.1 lnc-CTSF-1:1
4.0 lnc-CTSF-1:1
4.1 lnc-CTSF-1:1
5.0 lnc-CTSF-1:1
5.1 lnc-POLD4-21:1
5.2 lnc-CTSF-1:1