Transcript: lnc-CTSO-1:4

Basic information

LNCipedia transcript ID: lnc-CTSO-1:4 
LNCipedia gene ID: lnc-CTSO-1
Location (hg19): chr4:157033831-157065020
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 378 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008630; NONHSAT098943
Alternative gene names: XLOC_004134; linc-CTSO-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.3101 non-coding 
CPAT coding probability 1.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTSO-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTSO-1:4
3.1 lnc-CTSO-1:4
4.0 lnc-CTSO-1:4
4.1 lnc-CTSO-1:4
5.0 lnc-CTSO-1:4
5.1 lnc-MAP9-16:4
5.2 lnc-CTSO-1:4