Transcript: lnc-CTSO-5:5

Basic information

LNCipedia transcript ID: lnc-CTSO-5:5 
LNCipedia gene ID: lnc-CTSO-5
Location (hg19): chr4:157297932-157298241
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 310 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000074270.1|FTMT21400008975.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -271.4429 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTSO-5:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP11-171N4.2.1-5:4
5.0 lnc-RP11-171N4.2.1-5:4
5.1 lnc-MAP9-18:5
5.2 lnc-CTSO-5:5