Transcript: lnc-CTXN1-5:1

Basic information

LNCipedia transcript ID: lnc-CTXN1-5:1 
LNCipedia gene ID: lnc-CTXN1-5
Ensembl Gene ID: ENSG00000268149
Ensembl Transcript ID: ENST00000595655
Location (hg19): chr19:7977533-7978403
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 438 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT060854; ENST00000595655.1
Alternative gene names: ENSG00000268149.1; CTD-3193O13.13; AC010336.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.4502 non-coding 
CPAT coding probability 5.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTXN1-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC010336.2-2:1
4.0 lnc-AC010336.2-2:1
4.1 lnc-AC010336.2-2:1
5.0 lnc-AC010336.2-2:1
5.1 lnc-TIMM44-4:1
5.2 lnc-CTXN1-5:1