Transcript: lnc-CTXND1-2:3

Basic information

LNCipedia transcript ID: lnc-CTXND1-2:3 
LNCipedia gene ID: lnc-CTXND1-2
Location (hg19): chr15:80726136-80737493
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1777 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000594607.1
Alternative gene names: ENSG00000258010.2; RP11-210M15.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.6415 non-coding 
CPAT coding probability 49.32% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CTXND1-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-210M15.2.1-2:2
4.0 lnc-RP11-210M15.2.1-2:2
4.1 lnc-RP11-210M15.2.1-2:2
5.0 lnc-RP11-210M15.2.1-2:2
5.1 lnc-CHRNA3-39:3
5.2 lnc-CTXND1-2:3