Transcript: lnc-CTXND1-6:1

Basic information

LNCipedia transcript ID: lnc-CTXND1-6:1 
LNCipedia gene ID: lnc-CTXND1-6
Ensembl Gene ID: ENSG00000270919
Ensembl Transcript ID: ENST00000603875
Location (hg19): chr15:80872370-80872907
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 538 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT047708; ENST00000603875.1
Alternative gene names: ENSG00000270919.1; RP11-379K22.3; AC108451.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.7999 non-coding 
CPAT coding probability 12.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTXND1-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-210M15.2.1-6:1
4.0 lnc-RP11-210M15.2.1-6:1
4.1 lnc-RP11-210M15.2.1-6:1
5.0 lnc-RP11-210M15.2.1-6:1
5.1 lnc-CHRNA3-42:1
5.2 lnc-CTXND1-6:1