Transcript: lnc-CTXND1-7:2

Basic information

LNCipedia transcript ID: lnc-CTXND1-7:2 
LNCipedia gene ID: lnc-CTXND1-7
Location (hg19): chr15:80808597-80842638
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3870 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000025698.1|MICT00000120604.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.7803 non-coding 
CPAT coding probability 2.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTXND1-7:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP11-210M15.2.1-7:4
5.0 lnc-RP11-210M15.2.1-7:4
5.1 lnc-CHRNA3-40:2
5.2 lnc-CTXND1-7:2