Transcript: lnc-CTXND1-7:4

Basic information

LNCipedia transcript ID: lnc-CTXND1-7:4 
LNCipedia gene ID: lnc-CTXND1-7
Location (hg19): chr15:80827385-80842638
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2321 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000025698.1|MICT00000120606.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -1.3918 non-coding 
CPAT coding probability 2.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTXND1-7:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP11-210M15.2.1-7:5
5.0 lnc-RP11-210M15.2.1-7:5
5.1 lnc-CHRNA3-40:4
5.2 lnc-CTXND1-7:4