Transcript: lnc-CXCL12-1:2

Basic information

LNCipedia transcript ID: lnc-CXCL12-1:2 
LNCipedia gene ID: lnc-CXCL12-1
Location (hg19): chr10:44787706-44789157
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 915 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00017964; ENST00000452578.1; RP11-20J15.3-001; OTTHUMT00000047741.1; NONHSAT139967
Alternative gene names: XLOC_008795; linc-ZNF32-5; ENSG00000229116.1; RP11-20J15.3; OTTHUMG00000018056.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.7119 non-coding 
CPAT coding probability 18.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CXCL12-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXCL12-1:2
3.1 lnc-CXCL12-1:2
4.0 lnc-CXCL12-1:2
4.1 lnc-CXCL12-1:2
5.0 lnc-CXCL12-1:2
5.1 lnc-LRRC18-82:2
5.2 lnc-CXCL12-1:2