Transcript: lnc-CXorf36-46:12

Basic information

LNCipedia transcript ID: lnc-CXorf36-46:12 
LNCipedia gene ID: lnc-CXorf36-46
Location (hg19): chrX:45629146-45629608
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 331 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00017313
Alternative gene names: XLOC_008149; linc-CXorf36-1; Lnc-Ang362


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CXorf36-46:12 no no no no

Available literature

  1. Wang (2018), Long non-coding RNA expression profiles reveals AK098783 is a biomarker to predict poor prognosis in patients with colorectal cancer., Jpn. J. Clin. Oncol.
  2. Leung (2013), Novel long noncoding RNAs are regulated by angiotensin II in vascular smooth muscle cells., Circ. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXorf36-1:1
3.1 lnc-CXorf36-1:1
4.0 MIR222HG:8
4.1 MIR222HG:8
5.0 MIR222HG:8
5.1 lnc-PCSK1N-46:12
5.2 lnc-CXorf36-46:12