Transcript: lnc-CXorf36-46:8

Basic information

LNCipedia transcript ID: lnc-CXorf36-46:8 
HGNC Gene Symbol: lnc-CXorf36-46    
HGNC Full Gene Name: MIR222 host gene
Ensembl Gene ID: ENSG00000270069
Ensembl Transcript ID: ENST00000602507
Location (hg19): chrX:45627783-45629672
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1758 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT136809; ENST00000602507.1
Alternative gene names: ENSG00000270069.1; RP6-99M1.2; MIR222HG; Lnc-Ang362


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -157.2327 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CXorf36-46:8 no no no no

Available literature

  1. Wang (2018), Long non-coding RNA expression profiles reveals AK098783 is a biomarker to predict poor prognosis in patients with colorectal cancer., Jpn. J. Clin. Oncol.
  2. Leung (2013), Novel long noncoding RNAs are regulated by angiotensin II in vascular smooth muscle cells., Circ. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CXorf36-1:6
4.0 MIR222HG:7
4.1 MIR222HG:7
5.0 MIR222HG:7
5.1 lnc-PCSK1N-46:8
5.2 lnc-CXorf36-46:8