Transcript: lnc-CYB5R2-3:9

Basic information

LNCipedia transcript ID: lnc-CYB5R2-3:9 
LNCipedia gene ID: lnc-CYB5R2-3
Ensembl Gene ID: ENSG00000251364
Ensembl Transcript ID: ENST00000530846
Location (hg19): chr11:7448818-7456861
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 628 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530846; ENST00000530846.1; CTD-2516F10.2-010; OTTHUMT00000384646.1; NONHSAT017774
Alternative gene names: ENSG00000251364; ENSG00000251364.2; CTD-2516F10.2; OTTHUMG00000165526.1; ENSG00000251364.6; AC107884.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -196.46 non-coding 
CPAT coding probability 3.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYB5R2-3:9 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CYB5R2-2:9
3.1 lnc-CYB5R2-3:9
4.0 lnc-CYB5R2-3:9
4.1 lnc-CYB5R2-3:9
5.0 lnc-CYB5R2-3:9
5.1 lnc-OR10A6-11:21
5.2 lnc-CYB5R2-3:9