Transcript: lnc-CYB5R4-5:5

Basic information

LNCipedia transcript ID: lnc-CYB5R4-5:5 
LNCipedia gene ID: lnc-CYB5R4-5
Ensembl Gene ID: ENSG00000228679
Ensembl Transcript ID: ENST00000420766
Location (hg19): chr6:84693447-84717042
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 835 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011335; ENST00000420766; ENST00000420766.1; RP4-676J13.2-001; OTTHUMT00000041365.1; NONHSAT113802
Alternative gene names: XLOC_005371; linc-MRAP2-2; ENSG00000228679; RP4-676J13.2; ENSG00000228679.1; OTTHUMG00000015119.1; AL034347.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.5113 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYB5R4-5:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CYB5R4-1:3
3.1 lnc-MRAP2-2:3
4.0 lnc-CYB5R4-5:5
4.1 lnc-CYB5R4-5:5
5.0 lnc-CYB5R4-5:5
5.1 lnc-CYB5R4-5:5
5.2 lnc-CYB5R4-5:5