Transcript: lnc-CYLD-2:13

Basic information

LNCipedia transcript ID: lnc-CYLD-2:13 
HGNC Gene Symbol: lnc-CYLD-2    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2187
Ensembl Gene ID: ENSG00000261241
Ensembl Transcript ID: ENST00000576842
Location (hg19): chr16:50914120-50918012
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2248 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000576842.1; CTD-2034I21.2-001; OTTHUMT00000422675.2; NONHSAT142450
Alternative gene names: ENSG00000263082.1; CTD-2034I21.2; OTTHUMG00000173282.2; ENSG00000261241.6; LINC02128


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.008 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYLD-2:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-327F22.5.1-2:2
4.0 lnc-RP11-327F22.5.1-2:2
4.1 lnc-RP11-327F22.5.1-2:2
5.0 lnc-RP11-327F22.5.1-2:2
5.1 lnc-ADGRG1-128:9
5.2 lnc-CYLD-2:13