Transcript: lnc-CYP7B1-6:3

Basic information

LNCipedia transcript ID: lnc-CYP7B1-6:3 
LNCipedia gene ID: lnc-CYP7B1-6
Ensembl Gene ID: ENSG00000253554
Ensembl Transcript ID: ENST00000524360
Location (hg19): chr8:64641332-65153063
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 581 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524360.1; RP11-32K4.1-002; OTTHUMT00000378630.1; NONHSAT126949; ENST00000524360.5
Alternative gene names: ENSG00000253554.1; RP11-32K4.1; OTTHUMG00000164358.2; ENSG00000253554.5; AC022639.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.6029 non-coding 
CPAT coding probability 2.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYP7B1-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CYP7B1-6:3
4.0 lnc-CYP7B1-6:3
4.1 lnc-CYP7B1-6:3
5.0 lnc-CYP7B1-6:3
5.1 lnc-CPA6-67:6
5.2 lnc-CYP7B1-6:3