Transcript: lnc-CYR61-3:2

Basic information

LNCipedia transcript ID: lnc-CYR61-3:2 
LNCipedia gene ID: lnc-CYR61-3
Ensembl Gene ID: ENSG00000223653
Ensembl Transcript ID: ENST00000426125
Location (hg19): chr1:85743355-85913807
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 464 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426125; ENST00000426125.1; RP11-131L23.1-002; OTTHUMT00000029198.1; NONHSAT004243
Alternative gene names: ENSG00000223653; RP11-131L23.1; ENSG00000223653.1; OTTHUMG00000010579.1; ENSG00000223653.5; AL078459.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.5279 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYR61-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR63-3:2
3.1 lnc-CYR61-3:2
4.0 lnc-CYR61-3:2
4.1 lnc-CYR61-3:2
5.0 lnc-CYR61-3:2
5.1 lnc-SAMD13-18:13
5.2 lnc-CYR61-3:2