Transcript: lnc-CYR61-3:3

Basic information

LNCipedia transcript ID: lnc-CYR61-3:3 
LNCipedia gene ID: lnc-CYR61-3
RefSeq ID: NR_045484
Location (hg19): chr1:85742041-85743771
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 888 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT004241; NR_045484; NR_045484.1
Alternative gene names: LOC646626


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.6373 non-coding 
CPAT coding probability 17.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYR61-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CYR61-3:3
4.0 lnc-CYR61-3:3
4.1 lnc-CYR61-3:3
5.0 lnc-CYR61-3:3
5.1 lnc-SAMD13-18:8
5.2 lnc-CYR61-3:3