Transcript: lnc-DAPP1-2:3

Basic information

LNCipedia transcript ID: lnc-DAPP1-2:3 
LNCipedia gene ID: lnc-DAPP1-2
Ensembl Gene ID: ENSG00000245322
Ensembl Transcript ID: ENST00000515026
Location (hg19): chr4:100929228-101116256
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 764 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515026.1; RP11-15B17.1-003; OTTHUMT00000363432.1; NONHSAT097553
Alternative gene names: ENSG00000245322.2; RP11-15B17.1; OTTHUMG00000161022.2; ENSG00000245322.6; AC097460.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -174.928 non-coding 
CPAT coding probability 85.09% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DAPP1-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DAPP1-2:3
4.0 lnc-DAPP1-2:3
4.1 lnc-DAPP1-2:3
5.0 lnc-DAPP1-2:3
5.1 lnc-C4orf17-14:11
5.2 lnc-DAPP1-2:3