Transcript: lnc-DCLK2-2:1

Basic information

LNCipedia transcript ID: lnc-DCLK2-2:1 
LNCipedia gene ID: lnc-DCLK2-2
Ensembl Gene ID: ENSG00000250905
Ensembl Transcript ID: ENST00000505781
Location (hg19): chr4:150587209-150632301
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 510 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007656; ENST00000505781; ENST00000505781.1; RP11-707F2.1-001; OTTHUMT00000364772.1; NONHSAT098719
Alternative gene names: XLOC_003732; linc-DCLK2-2; ENSG00000250905; RP11-707F2.1; ENSG00000250905.1; OTTHUMG00000161396.1; AC093893.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.8606 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DCLK2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DCLK2-2:1
3.1 lnc-DCLK2-2:1
4.0 lnc-DCLK2-2:1
4.1 lnc-DCLK2-2:1
5.0 lnc-DCLK2-2:1
5.1 lnc-ARFIP1-33:1
5.2 lnc-DCLK2-2:1