Transcript: lnc-DCLK3-1:1

Basic information

LNCipedia transcript ID: lnc-DCLK3-1:1 
LNCipedia gene ID: lnc-DCLK3-1
Location (hg19): chr3:36810216-36825658
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 571 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000424886.1; AC105749.5-001; OTTHUMT00000341724.1; NONHSAT088985
Alternative gene names: ENSG00000242774.1; AC105749.5; OTTHUMG00000155802.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.1857 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DCLK3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DCLK3-1:1
4.0 lnc-DCLK3-1:1
4.1 lnc-DCLK3-1:1
5.0 lnc-DCLK3-1:1
5.1 lnc-OSBPL10-37:1
5.2 lnc-DCLK3-1:1