Transcript: lnc-DDC-1:4

Basic information

LNCipedia transcript ID: lnc-DDC-1:4 
LNCipedia gene ID: lnc-DDC-1
Location (hg19): chr7:50518334-50521012
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2566 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000502963; TCONS_00013170; NONHSAT120557
Alternative gene names: ENSG00000248258; XLOC_006441; linc-FIGNL1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.0859 non-coding 
CPAT coding probability 1.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DDC-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FIGNL1-1:2
3.1 lnc-FIGNL1-1:2
4.0 lnc-FIGNL1-1:2
4.1 lnc-FIGNL1-1:2
5.0 lnc-FIGNL1-1:2
5.1 lnc-TNS3-47:2
5.2 lnc-DDC-1:4