Transcript: lnc-DDX27-4:4

Basic information

LNCipedia transcript ID: lnc-DDX27-4:4 
LNCipedia gene ID: lnc-DDX27-4
Location (hg19): chr20:47935052-47936198
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1147 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000053477.1|FTMT28000002395.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -146.0585 non-coding 
CPAT coding probability 13.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DDX27-4:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-DDX27-4:4
5.0 lnc-DDX27-4:4
5.1 lnc-SNAI1-28:3
5.2 lnc-DDX27-4:4