Transcript: lnc-DDX51-8:1

Basic information

LNCipedia transcript ID: lnc-DDX51-8:1 
LNCipedia gene ID: lnc-DDX51-8
Ensembl Gene ID: ENSG00000256258
Ensembl Transcript ID: ENST00000542797
Location (hg19): chr12:132106436-132107748
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 617 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542797; ENST00000542797.1; RP11-495K9.9-001; OTTHUMT00000399232.1; NONHSAT032025
Alternative gene names: ENSG00000256258; RP11-495K9.9; ENSG00000256258.1; OTTHUMG00000168308.1; AC117500.4; AC117500.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -240.7073 non-coding 
CPAT coding probability 6.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DDX51-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DDX51-7:1
3.1 lnc-DDX51-8:1
4.0 lnc-DDX51-8:1
4.1 lnc-DDX51-8:1
5.0 lnc-DDX51-8:1
5.1 lnc-DDX51-8:1
5.2 lnc-DDX51-8:1

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