Transcript: lnc-DEFA1-1:1

Basic information

LNCipedia transcript ID: lnc-DEFA1-1:1 
LNCipedia gene ID: lnc-DEFA1-1
Location (hg19): chr8:6825664-6826635
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 290 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00014473
Alternative gene names: XLOC_006989; linc-DEFA4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.3766 non-coding 
CPAT coding probability 13.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DEFA1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DEFA1-1:1
3.1 lnc-DEFA1-1:1
4.0 lnc-DEFA1-1:1
4.1 lnc-DEFA1-1:1
5.0 lnc-DEFA1-1:1
5.1 lnc-DEFA1B-3:1
5.2 lnc-DEFA1-1:1