Transcript: lnc-DEFB112-1:2

Basic information

LNCipedia transcript ID: lnc-DEFB112-1:2 
LNCipedia gene ID: lnc-DEFB112-1
Ensembl Gene ID: ENSG00000230472
Ensembl Transcript ID: ENST00000431394
Location (hg19): chr6:50555320-50604578
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011500; ENST00000431394; ENST00000431394.1; RP1-28O17.1-002; OTTHUMT00000040880.1; NONHSAT113081; ENST00000431394.5
Alternative gene names: XLOC_005741; linc-DEFB112; ENSG00000230472; RP1-28O17.1; ENSG00000230472.1; OTTHUMG00000014831.1; ENSG00000230472.5; AL135908.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.4741 non-coding 
CPAT coding probability 5.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DEFB112-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DEFB112-1:2
3.1 lnc-DEFB112-1:2
4.0 lnc-DEFB112-1:2
4.1 lnc-DEFB112-1:2
5.0 lnc-DEFB112-1:2
5.1 lnc-PGK2-8:2
5.2 lnc-DEFB112-1:2