Transcript: lnc-DEFB132-1:1

Basic information

LNCipedia transcript ID: lnc-DEFB132-1:1 
LNCipedia gene ID: lnc-DEFB132-1
Ensembl Gene ID: ENSG00000272874
Ensembl Transcript ID: ENST00000608495
Location (hg19): chr20:247827-249498
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1672 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608495.1
Alternative gene names: ENSG00000272874.1; RP5-1103G7.10; AL034548.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.6043 non-coding 
CPAT coding probability 19.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DEFB132-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DEFB132-1:1
4.0 lnc-DEFB132-1:1
4.1 lnc-DEFB132-1:1
5.0 lnc-DEFB132-1:1
5.1 lnc-MAVS-59:1
5.2 lnc-DEFB132-1:1