Transcript: lnc-DENND1A-3:1

Basic information

LNCipedia transcript ID: lnc-DENND1A-3:1 
LNCipedia gene ID: lnc-DENND1A-3
Ensembl Gene ID: ENSG00000236668
Ensembl Transcript ID: ENST00000453529
RefSeq ID: NR_135129
Location (hg19): chr9:126768556-126771675
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2146 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000453529.2; RP11-85O21.2-001; OTTHUMT00000054007.2; NONHSAT134671; NR_135129.1
Alternative gene names: ENSG00000236668.2; RP11-85O21.2; OTTHUMG00000020644.2; AC006450.3; LOC100505588


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.4522 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DENND1A-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DENND1A-3:1
4.0 lnc-DENND1A-3:1
4.1 lnc-DENND1A-3:1
5.0 lnc-DENND1A-3:1
5.1 lnc-ZBTB6-25:1
5.2 lnc-DENND1A-3:1