Transcript: lnc-DENND5A-1:1

Basic information

LNCipedia transcript ID: lnc-DENND5A-1:1 
LNCipedia gene ID: lnc-DENND5A-1
Location (hg19): chr11:9142141-9142948
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 365 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019571; NONHSAT017912
Alternative gene names: XLOC_009370; linc-SCUBE2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.266 non-coding 
CPAT coding probability 9.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DENND5A-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DENND5A-1:1
3.1 lnc-DENND5A-1:1
4.0 lnc-DENND5A-1:1
4.1 lnc-DENND5A-1:1
5.0 lnc-DENND5A-1:1
5.1 lnc-C11orf16-9:1
5.2 lnc-DENND5A-1:1