Transcript: lnc-DFFB-4:1

Basic information

LNCipedia transcript ID: lnc-DFFB-4:1 
LNCipedia gene ID: lnc-DFFB-4
Location (hg19): chr1:4192617-4194185
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 624 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000823; NONHSAT000572
Alternative gene names: XLOC_000032; linc-AJAP1-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -141.1913 non-coding 
CPAT coding probability 8.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DFFB-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DFFB-4:1
3.1 lnc-DFFB-4:1
4.0 lnc-DFFB-4:1
4.1 lnc-DFFB-4:1
5.0 lnc-DFFB-4:1
5.1 lnc-VAMP3-49:1
5.2 lnc-DFFB-4:1